AT4G02970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 7SL RNA1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Signal recognition particle. Type 4 of RNA polymerase III dependent genes. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
7SL RNA1 (AT7SL-1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03350.1); Has 8670 Blast hits to 3996 proteins in 634 species: Archae - 0; Bacteria - 6; Metazoa - 3720; Fungi - 1035; Plants - 2265; Viruses - 166; Other Eukaryotes - 1478 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1317499..1319179 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30386.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||
| Length | 270 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNVYIDTETG SSFSITIDFG ETVLEIKEKI EKSQGIPVSK QILYLDGKAL EDDLHKIDYM ILFESRLLLR ISPDADPNQS NEQTEQSKQI DDKKQEFCGI 101: QDSSESKKIT RVMARRVHNI YSSLPAYSLD ELLGPKYSAT VAVGGRTNQV VQPTEQASTS GTAKEVLRDS DSPVEKKIKT NPMKFTVHVK PYQEDTRMIH 201: VEVNADDNVE ELRKELVKMQ ERGELNLPHE AFHLLGLGSS ETCPHQNRSE EPNQCPTILM SPHGLQAIVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)