AT4G01037.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
what's this factor? (WTF1); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G62990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:451444..453030 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 61236.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||
| Length | 528 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPKLLLSAH KPLFVSCNSP FNEKTKLSVK SGLPMSTIRA ARSQFMGEGL ILGNKYGFWS TSRKTRVVVE PVRAAVKRRK ELTFDSVVQR DKKLKLVLNI 101: RKILVSQPDR MMSLRGLGKY RRDLGLKKRR RFIALLRKYP GVFEIVEEGA YSLRFKMTSE AERLYLDEMR IRNELEDVLV VKLRKLVMMS IDKRILLEKI 201: SHLKTDLGLP LEFRDTICQR YPQYFRVVPT PRGPALELTH WDPELAVSAA ELSEDDNRTR ESEERNLIID RPPKFNRVKL PRGLNLSKSE TRKISQFRDM 301: QYISPYKDFS HLRSGTLEKE KHACGVIHEL LSLTTEKRTL VDHLTHFREE FRFSQQLRGM LIRHPDLFYV SLKGERDSVF LREAYRNSEL IDKDPLTLVK 401: EKMRALVSVP RFPRRGGPRK DEEGREVEID GSDADGEEEE EESDAEEWSD VDGYLEGEDG GNDDDGDWTD DEGEEDVPPN FDDDDEDEEE DSVKIGLSPS 501: SRKSSSPRKK EEKVLTPVFP DGTPREKW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)