AT3G61480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.787 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT5G28350.2); Has 348 Blast hits to 320 proteins in 156 species: Archae - 0; Bacteria - 25; Metazoa - 129; Fungi - 99; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22749984..22756476 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121331.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||
| Length | 1080 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAYGWPQVIP LLPGSQRVVY LKLAGRLLLV VSPSHLELWG SSQQRVRLGK YMRDDKSLRE EGENLQAVWS PDSKLIAVLV PFAGKDLSVS NFVRDSKTML 0101: LGLSDGSLYS ISWKGEFGGA FSIGSHPSAS NDDRLLSYTL GNGLVSGVAS PTLASDDKFS TKPAIVQLEL CTRSKLLFVL NSDGQLVVCS VNKKGLKYTE 0201: SIRAEKKLGG DAVCASVASE QQILAVGTRK GMVELYDLSH SISLLRTVSL HDWGYSADYT GPVNNIAWTP DNSAFAVGWK SRGLAVWSVS GCRLMSTVRQ 0301: IGLTSTSSPK INPKQDCKYE PLMSGTSAIQ WDEYGYRLFA TEEASCDRIL AFSFGKCCLN RGVSGKTYVR QVMYGDDRLL MVQAEDTDEL KLLHLKLPVS 0401: YISQNWPVQH VAASEDGKYL AVAGLHGLIL YDVRFKKWRV FGDVSQEQQI HCKGLLWLGK IVVICNFIEA SETYELLFYP RYHLDQSSLL CRKVLLGKPM 0501: VMDVYQDYIL VSYLPFIIHV YHVKIYGELT PSSKADLQLS TVRELSIMTA KSHPAAMRFV PDQHPREGEL DEDNLSSDLS EREPSRCLIL RGNGELSLLD 0601: LVDGRERELT DSVELFWVTC GQSEEKTNLV EEVSWLDYGH RGMQVWYPSL GDDPFMQEDF LQLDPELEFD REVYPLGLLP NVGVVVGVSQ RMSFSASAEF 0701: PCFEPTPQAQ TILHCLLRHL LQRDKNEEAL LLAQLSAEKP HFSHCLEWLL FTVFDAEISR PNPNRNQISG PGHLKKLSLL RKACDLIKNF PEYYDVVVNV 0801: ARKTDARHWA DLFSAAGIST TLFEDCFQRR WYRTAACYIL VIAKLEGVAV SQYCALRLLQ ATLDESLYDL AGELVRFLLR SGRDIEQAPT ESDSLSPKLL 0901: GFLIFGSSHK KSSLDKSSSF KEQSPHVASV KSILESHASY LMSGKELSKL VAFVKGTQFD IDFLQRERYG CAQLQNFAAG LELIGQKLQM SELQNRLDAE 1001: FLLAQMCSVK FKEWIVVLAT LLQRSEVLYD IFRYDLRLWK AYSVTLESHL AFAQYHDLLQ ILEAKLSATS REESNRGSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)