AT3G60950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 4425 Blast hits to 4326 proteins in 1442 species: Archae - 111; Bacteria - 2322; Metazoa - 578; Fungi - 318; Plants - 452; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22524475..22529770 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71124.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGWSRMMTY RSIKRVSKAV DMKVLGSLSR DDFEENFVVK WLNKLLSKMW PYIAEAATMV VRYSVEPLLE DYRPPGITSL KFSKLTLGNK APKIECKIRY 101: SCSKFQGRLS ISTNTCFWLK QLKDLQVFTV ARVIFQLADE IPRISAVVVA LLAEPKPRID YTLKAVRGSL TAIPGLSAMI DDTVDTIVID MLQWPHRIVF 201: PIGGIPVDLS DFELKPQRKL IYKTKAIENN LNPVWDQTFE LIVEDKETQS LTVEVFDKDV GQDERLGLVK LPLSSLEAGV TKELELNLSK MWPYIAETIF 301: RPNGAHRCHN YMKYPNIMKL GEAAILHYTY SKFSDLTARR DRCCCKPKEE DVKICFMLDF DRAISPRNKK FQQGLMSNAT VKSVPFSINN SKGKELKIVG 401: AAMGSDSDRD EIEAMTVQEL KSHIEASLYS FRFSCCFVIV SVDIQILDAN KNLSQLYDFI WTAILPAYGI ENREKRVKQS TEKNLKAKVV SSKDISKEWK 501: NIKPLRVRYG TGLSGSDHDM EGRMVTAEFD SFYLISTYVP NSVDGLKGLV LLKLNAIEDW DRTLSNHIKD LEKSKPVVLT GDLNCAHEEI DIFNPAEAAY 601: LVLSVTLIRV IAMVAAKPTK DTIQKNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)