AT3G58130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.641 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT2G27340.4); Has 566 Blast hits to 562 proteins in 260 species: Archae - 0; Bacteria - 161; Metazoa - 106; Fungi - 162; Plants - 52; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21527946..21529654 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29166.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 257 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAWLVVSVSL IVIWLASFCK IFFRATSISG AAILDDGKTP QKKNVLFVIA HPDDESMFFS PTINYLASNA CNLHMLCLST GNADGMGSIR NNELHRACAV 101: LKVPLQQLKI LNHPNLQDGF GQLWSHDLLT EIIEEEVTKH DIHTIITFDN YGVSGHCNHR DVHRGVLKFL QTNSGRNVKA WELVSLNIFR KYCGPVDIWL 201: SILSAKIHPS KVIIINEQPW KSFKAMAQHL SQWVWFRKLF VSFSSYTYAN TLSRINP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)