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AT3G56020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L41 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L41 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 185 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 40; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
EMBL:AC009894EMBL:AC009991EMBL:AC073395EMBL:AC074395
EMBL:AL163832EMBL:AY058053EMBL:AY062780EMBL:AY081623
EMBL:AY098947EMBL:AY136332EMBL:BT002078EMBL:BT004288
EMBL:BT005635EMBL:CP002684EMBL:CP002685EMBL:CP002686
EnsemblPlants:AT1G56045.1EnsemblPlants:AT2G40205.1EnsemblPlants:AT3G08520.1EnsemblPlants:AT3G11120.1
EnsemblPlants:AT3G56020EnsemblPlants:AT3G56020.1entrez:2745833entrez:818612
entrez:820000entrez:820283entrez:824768ExpressionAtlas:P62120
GeneID:2745833GeneID:818612GeneID:820000GeneID:820283
GeneID:824768Genevisible:P62120GO:GO:0003735GO:GO:0005840
GO:GO:0006412Gramene:AT1G56045.1Gramene:AT2G40205.1Gramene:AT3G08520.1
Gramene:AT3G11120.1Gramene:AT3G56020.1InterPro:IPR007836KEGG:ath:AT1G56045
KEGG:ath:AT2G40205KEGG:ath:AT3G08520KEGG:ath:AT3G11120KEGG:ath:AT3G56020
KO:K02928ncoils:CoilPaxDb:P62120Pfam:P62120
Pfam:PF05162PIR:T49214PRO:PR:P62120ProteinModelPortal:P62120
Proteomes:UP000006548RefSeq:NP_187465.1RefSeq:NP_187723.1RefSeq:NP_191161.1
RefSeq:NP_850328.1RefSeq:NP_974039.1SMR:P62120STRING:3702.AT3G56020.1
TAIR:AT1G56045TAIR:AT2G40205TAIR:AT3G08520TAIR:AT3G11120
TAIR:AT3G56020UniGene:At.44740UniGene:At.46704UniGene:At.47634
UniGene:At.48774UniGene:At.51317UniGene:At.6380UniGene:At.68187
UniGene:At.68201UniProt:P62120UniProt:Q682R5
Coordinates (TAIR10) chr3:-:20790826..20791043
Molecular Weight (calculated) 3428.56 Da
IEP (calculated) 13.41
GRAVY (calculated) -2.62
Length 25 amino acids
Sequence (TAIR10)
(BLAST)
1: MRAKWKKKRM RRLKRKRRKM RQRSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)