AT3G48900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.833 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : single-stranded DNA endonuclease family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
single-stranded DNA endonuclease family protein; FUNCTIONS IN: chromatin binding, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair, chromatin assembly or disassembly; LOCATED IN: chromatin, endomembrane system, nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Chromo domain-like (InterPro:IPR016197), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Chromo domain (InterPro:IPR000953), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT3G28030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18132449..18136239 | ||||||||||||
| Molecular Weight (calculated) | 60807.60 Da | ||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||
| Length | 536 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSNVALVVS SLHMMASFWI VFFDFVLYWF SQIADDGVEP SKETSLKRNM GSEFSCIIKE AKVIASTLGI LCLDGIEEAE AQCALLNSES LCDACFSFDS 101: DIFLFGAKTV YREICLGEGG YVVCYEMDDI KKKLGLGRNS LIALALLLGS DYSQGVRGLR QEKACELVRS IGDNVILEKV ASEGLSFAEK PRKSKKQVRP 201: SVCSKKGTLP LVVINGNNRD PERLEEIKQV IDAFMNPKCH QADSNTVSRA LAEFSFQRTK LQEICHQFFE WPPEKTDEYI LPKVAERNLR RFANLQSRST 301: EVEVNLPLHK PQMPEKCPVS EIIKTRKVQG RECFEVSWND LEGLESSIVP ADLVERACPE KIIEFKEKMA AKKKKPKPKQ KQKETSSPTK SSSLVELSLE 401: LQHLDLNSTS LVSRSTLEEA EQENEQQNSK KHDYLRLIDS PDRENCNNAW SNRDRLGVGM SSFPLYPETE VIDLISPCPE ARSRSVSRSY QEQKSHDHQL 501: ETVIELSDSE TDDEEHCKKA RELRIFLQNI RKDIIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)