AT3G24870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Helicase/SANT-associated, DNA binding protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Helicase/SANT-associated, DNA binding protein; FUNCTIONS IN: DNA binding; LOCATED IN: apoplast; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), HSA (InterPro:IPR006562), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Helicase/SANT-associated, DNA binding protein (TAIR:AT3G24880.1); Has 9846 Blast hits to 7198 proteins in 452 species: Archae - 0; Bacteria - 514; Metazoa - 4085; Fungi - 1476; Plants - 1172; Viruses - 23; Other Eukaryotes - 2576 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9075237..9084278 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 206424.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1907 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHGSVSGYLL VNAEVDSMGG VIDSGGGIGV KTSPRRTAIE KAQAELRQEY DVREERRREL EFLEKGGNPL DFKFGIATSH SVQSTSLTDQ QAEHFVNSEV 0101: KDSFALTASP HGDSVESSGR PGVPTISEPN TADNLLLFDS ENKSVEGERN LRHPNRQNRT SESERSSKAH TNQNTKETED SAIFRPYARR NRSKISRDPA 0201: RSSSTDLVQN RGGLATSISI RRGSVEGKGC IPEAANQKDM HTTSVSCPVF ANSNGNIVPK NRVSSNSLNT KVDGEPVVRE STAGSKTSLL KDEADISYSK 0301: SSAYLPVGES GLAGEKAQLV STGGSPKAAT IAGQKNSSTQ LNGLRDSTVE EESLTNRGAT GTNGLESESS HANNVEVNVD NERDLYKVDK LDSDEISMQK 0401: TLRVEGLLDQ TVGEMTKTKI EDETGQSTTI ISECIPECEM QMKSVKIENQ SHRSTAEMQT KEKSSETEKR LQDGLVVLEN DSKVGSILSE NPSSTLCSGI 0501: PQASVDTSSC TVGNSLLSGT DIEALKHQPS SDAVMLDTVK EDAILEEARI IQAKKKRIAE LSCGTAPVEV REKSQWDFVL EEMAWLANDF AQERLWKMTA 0601: ATQICHRVAL TCQLRFEERN QHRKLKKIAS VLSYAILQFW SSVEAEVPGE LEETSLGIVK ETCQESNCLN GIRCLAAGVK EYASRFLKYN NSSISYHSAA 0701: LSTPDNMCDP EILDISMVDQ LTEASLFYSV PSGAMEVYLK SIESHLTRCE KSGSSMQEEV DTSAYDTAGD IGYNVTAFDE DEGETSTYYL PGAFESSRSF 0801: NISHKKRKNL MKSHSARSYD LGDDLPYVNN TGGSNSSSLI VKRPDSNINA GSVPTRRVRT ASRHRVVSPF GCATTGNLPV PSKTDASSGD TSSFQDEYSS 0901: LHGGSAVQKG TEVESSVNFE KLLPYDMAET SGKPKKKKKT HQGSAYDQTW HLNPSVHVEQ KDHWKKRPEN NFDMNGLYGP HSAKKQKTTK QLVENNFDMA 1001: IPHTGSIPSP AASQMSNMSN PNKSIKFIGG RDRGRKIKGL KISPGQHGSG NPWSLFEDQA LVVLVHDMGP NWELISDAMN STLKIKYIYR NPTECKDRHK 1101: ILMDKTAGDG ADSAEDSGNS QSYPSTLPGI PKGSARQLFQ RLQGPMEEDT LKSHFEKICL IGKKLHYRKT QNDGRDPKQI VPVHNSQVMA LSQVFPNNLN 1201: GGVLTPLDVC DASTSGQDVF SLENPGLPML NQGTPVLPTS GAHPSTPGSS GVVLSNNLPT TSGLQSASVR DGRFNVPRGS LPLDEQHRLQ QFNQTLSGRN 1301: LQQPSLSTPA AVSGSDRGHR MVPGGNAMGV SGMNRNTPMS RPGFQGMASA AMPNTGNMHT SGMVGIPNTG NIHSGGGASQ GNSMIRPREA VQHMMRMQAA 1401: QGNSPGIPAF SNLSSGFTNQ TTPVQAYPGH LSQQHQMSPQ SHVLGNSHHP HLQSPSQATG AQQEAFAIRQ RQIHQRYLQQ QQQQFPASGS MMPHVQQPQG 1501: SSVSSSSQNS PQTQPPVSPQ PLSMPPVSPS PNINAMAQQK PQKSQLALHG LGRSPQSGTS GVNNQAGKQR QRQLQQSARQ HPHQRQPTQG QQLNKQLKGM 1601: GRGNMIHQNI TVDQSHLNGL TMPQGNQATE KGEIAVSVRP DQQSSVGTTT STDLQSKPFV SPLSSNHSQQ LPKSFPGALS PSPQQQMQLH SDNSIQGQSS 1701: PATPCNILST SSLSIAPAVA PSNHQHLLIH QKQRNQVQST AQRVVQHNHL GNSELSKKSQ AECMPRVPQS VTNTTQTASM GTTKGMPQAS NDLKNIKAVG 1801: STAVPALEPP SCVASVQSTA SKVVNNSNTD SAGNDPVSTP NQGLAQKHGI KGVTQRQQQS LPSEEKRPKL PEKPTVQNQK HLASEEQPHL EEAQELSSSK 1901: PPDTKVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)