AT3G23800.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : selenium-binding protein 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
selenium-binding protein 3 (SBP3); FUNCTIONS IN: selenium binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 910 Blast hits to 900 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:8581701..8583704 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53362.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAAMNNHDG DCCKSGPGYA TPLLAMSGPR EKLIYVAAIY TGTGQAKPDY LATVDVEPSS STYSSVIHRL PMPYLEDELH HSGWNSCSSC YGDSSCERRY 101: LILPSLLSGR IYVIDTKTNP REPSLHKFVD PAEVLEKTGL AYPHQPHCLA SGDVLVSCLG DEDGNAEGSG FLLLDSEFNI KGRWEKDGNS PLYGYDFWYQ 201: PRHKTMISTS WGAPAAFTKG FDLKDVSDGL YGKHLHVYSW PQGELKQILD LGDTGLLPLE VRFLHEPDKA TGFAGCALSS TLVRFFKNDD ETWSHEVAIS 301: VEPLKVENWI LPEMPGLITD FLISLDDRFL YCSNWLHGDI RQYNIEDPKT PVLTGQIHVG GLVQKGSLVL ALGEEGKAFQ FDVPKIKGQR LRGGPQMFQL 401: SLDGKRLYVT NSLFSVWDRQ FYPELVEKGS HMLQIDVDTD KGGLSINPNF FVDFGTEPDG PSLAHEMRYP GGDCTSDIWV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)