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AT3G23325.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Splicing factor 3B subunit 5/RDS3 complex subunit 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Splicing factor 3B subunit 5/RDS3 complex subunit 10; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR:AT4G14342.1); Has 334 Blast hits to 334 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:7245DNASU:821913eggNOG:ENOG4111NTVeggNOG:KOG3485
EMBL:AB015474EMBL:AY063990EMBL:AY096688EMBL:CP002686
EnsemblPlants:AT3G23325EnsemblPlants:AT3G23325.1entrez:821913GeneID:821913
Genevisible:Q9LW64Gramene:AT3G23325.1hmmpanther:PTHR20978hmmpanther:PTHR20978:SF0
HOGENOM:HOG000210519InParanoid:Q9LW64IntAct:Q9LW64InterPro:IPR009846
InterPro:IPR017089iPTMnet:Q9LW64KEGG:ath:AT3G23325KO:K12832
OMA:YSRLAYFPANTHER:PTHR20978PaxDb:Q9LW64Pfam:PF07189
Pfam:Q9LW64PhylomeDB:Q9LW64PIRSF:PIRSF037010PRIDE:Q9LW64
PRO:PR:Q9LW64Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_566727.1STRING:3702.AT3G23325.1TAIR:AT3G23325UniGene:At.27115
UniProt:Q9LW64
Coordinates (TAIR10) chr3:+:8345808..8346856
Molecular Weight (calculated) 10177.90 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.64
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWTVNIQRD SYASYIGHYP MLSYFAIAEN ESIGRERYNF MQKMLLPCGL PPEREDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)