AT3G23140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 and C2HC zinc fingers superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes UPRIGHT ROSETTE (URO). Overexpression of URO alters indole-3-acetic acid (IAA) homeostasis. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UPRIGHT ROSETTE (URO); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: auxin homeostasis, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G43540.1); Has 720 Blast hits to 720 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 4; Plants - 698; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8250579..8251097 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 18802.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||||||
| Length | 172 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHRDKQIDS GSGSGENRRT YDCDICKRGF TNPQALGGHN NIHRRERERY PSSSSSSHSF PFSLPLPSQS PSSSTNFTNP PPYFPTIESY LHQGSQPPIN 101: PSHNTQYFGS SSSSRGGGRF AQGASHDLNL SLGLGSMNED DDTHRSPPET GGSQPQDGDL DLDLRLGGHR HH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)