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AT3G20890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G66010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUBKeggNOG:ENOG4111GHCEMBL:CP002686EnsemblPlants:AT3G20890
EnsemblPlants:AT3G20890.1entrez:821638Gene3D:3.30.70.330GeneID:821638
GO:GO:0000166GO:GO:0003676Gramene:AT3G20890.1hmmpanther:PTHR13976
hmmpanther:PTHR13976:SF40InParanoid:F4IWB2InterPro:IPR000504InterPro:IPR012677
iPTMnet:F4IWB2KEGG:ath:AT3G20890KO:K12898OMA:FFKDFEL
PaxDb:F4IWB2Pfam:PF00076Pfam:PF14259Pfscan:PS50102
PRIDE:F4IWB2PROSITE:PS50102ProteinModelPortal:F4IWB2Proteomes:UP000006548
Reactome:R-ATH-72163RefSeq:NP_188725.3SMART:SM00360SMR:F4IWB2
SUPFAM:SSF54928TAIR:AT3G20890UniGene:At.50676UniProt:F4IWB2
Coordinates (TAIR10) chr3:+:7319939..7321054
Molecular Weight (calculated) 31785.40 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.55
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MFYRGYGDGP DGREMGPKRQ RMIDQGPPGP FYGPHPSSGF MYNPYGFVAP PPPPPFPAVR LRGLPFDCAE LDVVEFFHGL DVVDVLFVHR NNKVTGEAFC
101: VLGYPLQVDF ALQKNRQNMG RRYVEVFRST KQEYYKAIAN EVAESRVHGM ASGGGGGLGG GNGSGGGGGG GGGGGRISGG SSPRRHVQRA RSSDDGKEDI
201: EHTGILRLRG LPFSAGKEDI LDFFKDFELS EDFVHVTVNG EGRPTGEAFV EFRNAEDSRA AMVKDRKTLG SRYIELFPSS VEELEEALSR GR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)