AT3G15460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal RNA processing Brix domain protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G52930.1); Has 415 Blast hits to 413 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 66; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5214279..5216188 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36351.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.26 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRKRKHSET VTAAPVKDSA PERPQRTLLG WKDKKEDAEN SKPAYASVFR NKEKVLVTCS RRINFRYRHL MLNMVSLLPH CKKDSKVEAK SSRGATLNEL 101: IELKGSSSCL FFECRKHKDL YMWMVKSPGG PSVKFLVNAV HTMEELKLTG NHLKGSRPLL TFSSNFENDA HWKLLKEMLT QIFGIPEGHR KSKPYHDHVF 201: VFSIVDDHIW FRNYQISVPH NESDKIARGD LDKMTLIEVG PRFCLNPIKI FGGSFGGTTL YENPFYVSPN QIRALEKRNK AGKFAKKIKA KTRRKMHELS 301: NPLEPDEFTD MWNDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)