AT3G12590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3996473..4003657 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 130828.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||
| Length | 1184 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSTYSPGQS PGSSRLLQLG AAGSASRLRS SSSKKPPEPL RRAVADCLSS SPPPVNSHHG AIPSMAPSEA LRNLRDYLSA SATTDLAYNM LLEHTIAERD 0101: RSPAVVTRCV ALLKRYILRY KPGEETLLQV DKFCVNLIAE CDASLKQKSL PVLSAPAGAS PLPVSSFASA ALVKSLHYVR SLVALHIPRR SFQPAAFAGA 0201: TLASRQLLPS LSSLLSKSFN SQLSPANAAE SPQKKDAANL SVSNLSNIQE INAMEDTEYI SSDLLNWRWV GELQLSSASS ESERPVNLQD MNNCNLLEVG 0301: AAGLLVGDME AKMKGQHWKY FGTAEMPYLE QLLQPASVTM ITNSASARSH LRAITASKRT RAGPQQIWDD STVNTFRPRA RPLFQYRHYS EQQPLRLNPA 0401: EVGEVIAAVC SEASSTPSNQ MTVSPQLTSK TGKPSMDVAV SVLIKLVIDM YVLDARIAAP LTLSMLEEML CSTKAPCRIR VFDLILNLGV HAQLLEPMIS 0501: DNATTIEEDY AQETYIDNEN RLLLQGTRTK DLPKMSSTSS AIENFESWIL KILFEILLLL VQVEEKEECV WASALSCLLY FICDRGKIRR NQLNGLDIRV 0601: IKALLGTSKR NSWSEVVHSK LICIMTNMFY QSPEPEGSNK AISSASNFLI DQVDLIGGVE YIFFEYSLAT TREERRNLYS VLFDYVLHQI NEACSSAGLS 0701: EYTDDEIQPL AVRLALADAP EAFYISVKLG VEGIGEILRR SIAAALSGFS NSERLNQLLA NITEKFDTII GSFTHLDKEF LHLKQITKSS KFMESILDLR 0801: NDISMSVNLA WATLHSLLHS ERTTYRQNGY IWLGDLLIAE ISEESGGSIW LSIKDLQQKI AHCGTSDSLV TSDVPISIHL LCGLLKSRNS VIRWGFLFIL 0901: ERLLMRSKFL LDENETQRST GGVATQDHKD KRLEKANAVI DIMSSALSLM AQINETDRIN ILKMCDILFS QLCLKVLSTD EDAVPNSADR NSKFDTSHRN 1001: SYKESVDEGD TKPRYNNVSV STCETASMAA MLLRGQAIVP MQLVARVPAA LFYWPLIQLA GAATDNIALG VAVGSKGRGN IPGATSDIRA TLLLLLIGKC 1101: TADTVAFQEV GGEEFFRELL DDTDSRVAYY SSAFLLKRMM TEEPEKYQNM LQKLVFKAQQ SNNEKLLENP YLQMCGILQL SNEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)