AT3G10360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 4 (PUM4); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Nucleic acid binding NABP (InterPro:IPR012940), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3756 Blast hits to 2007 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 783; Fungi - 1274; Plants - 892; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3211276..3215144 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111619.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1003 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVTNSYMDTR SNLTSVNRGS NVDLEDRFQR ELESLLQQHR NQQSFGRERE RDIDVHRSGS APPTVEGLLR AMDNQYLNNN NSDHRDVGNI SSITTSNGVE 0101: LLSDDELRWH PEYLSYYYSN EHSNPRLPPP LLSREDWRVA QRFHNSESVF DPVGEWRKKT VEVDNSSSLF SVQPGVPVEQ AENDLMELRN AVAQGRSQKV 0201: QRLDQGREDL IGLSGYSGLG PRRKSFADIL QEGLERDAAL GSQLSRPASC NTFRDMKDAA VLSNFSAGGF DSPLAFHDSL HSTAKNSPNT MLGSTMSSPV 0301: PRNRTPDSHL VGRSTASGLP PIGTRVGPVE KKNTFGTAIQ NCESYTAADV ADTLSRLNMS EMSQVKENHM QSQLQVELEN QSDVMRYIPN GHKKALRQQN 0401: TAETKDHLFS ANYGGMSGYG ASLGASTVGS HGQVNIPKRT SSSASLYSTS DHSRLGSVGL SDVNIRNGNI NGTDFSTAGG YMAKNKLNSL AEHYSAEGSH 0501: LTGDGDRQSL NRLINQVASE LHSPVMDPHY SQYLHTASST AAPIDHSLIR NNFGTSNGDT ANEYLAMLLA QNRQQLGNLN AANSRFFESP SYDLGNMYLG 0601: NHLPSPSKNS RNFQNMRMSQ SASMMKVPFG GLQGSSHVDI GSTAEASLLE GFKNNKTRSL ELSEIVGHVI EFSMDQYGSR FIQQKLETAT DEEKNAIFPE 0701: ILPYGRTLMT DVFGNYVIQK FFEHGTTKQR KELAEQVTGH VLALSLQMYG CRVIQKALEV VELEQQARMV KELDGSVMKC VHDQNGNHVI QKCIERLPQD 0801: WIQFIISSFY GKVLALSTHP YGCRVIQRVL EHIDDIETQR IIMEEIMDSV CTLAQDQYGN YVIQHIIQHG KPHERSEIIN KLAGQIVKMS QQKFASNVVE 0901: KCLTFGGPEE RQVLVNEMLG YTDENEPLQA MMKDPFGNYV VQKVLETCDD QSLALILSRI KVHLNALKRY TYGKHIVARV EKLITTGERR IGLSSSLAAN 1001: TTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)