AT3G04810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.886 ASURE: cytoskeleton What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NIMA-related kinase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NIMA-related kinase 2 (NEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 3 (TAIR:AT5G28290.1); Has 124232 Blast hits to 122078 proteins in 4151 species: Archae - 113; Bacteria - 14232; Metazoa - 45825; Fungi - 12238; Plants - 30614; Viruses - 487; Other Eukaryotes - 20723 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1318096..1321101 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68038.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 606 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENYEVLEQI GKGSFGSALL VRHKHEKKLY VLKKIRLARQ TGRTRRSAHQ EMELISKIHN PFIVEYKDSW VEKGCYVCII IGYCKGGDMA EAIKKTNGVH 101: FTEEKLCKWL VQILLALEYL HANHILHRDV KCSNIFLTKD QDIRLGDFGL AKVLTSDDLA SSVVGTPSYM CPELLADIPY GSKSDIWSLG CCMYEMTAMK 201: PAFKAFDMQG LINRINRSIV PPLPAQYSAA FRGLVKSMLR KNPELRPSAA ELLRQPLLQP YIQKIHLKVN DPGSNVLPAQ WPESESARRN SFPEQRRRPA 301: GKSHSFGPSR FRGNLEDSVS SIKKTVPAYL NRERQVDLST DASGDGTVVR RTSEASKSSR YVPVRASASP VRPRQPRSDL GQLPVSSQLK NRKPAALIRR 401: ASMPSSRKPA KEIKDSLYIS KTSFLHQINS PDVSMNAPRI DKIEFPLASY EEEPFVPVVR GKKKKASSRG SYSPPPEPPL DCSITKDKFT LEPGQNREGA 501: IMKAVYEEDA YLEDRSESSD QNATAGASSR ASSGVRRQRF DPSSYQQRAE ALEGLLEFSA RLLQDERYDE LNVLLRPFGP GKVSPRETAI WLSKSFKETT 601: TTKLGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)