AT2G45260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.827 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF641) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF641); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT4G34080.1); Has 407 Blast hits to 396 proteins in 44 species: Archae - 0; Bacteria - 10; Metazoa - 42; Fungi - 9; Plants - 286; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18664661..18665938 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48090.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPSGLKETQ LRESNNNQKV HPQPMEESIN QNPEAMEALI SNLFGNISSL KSAYIELQSA HTPYDPEKIQ AADKVVISEL KNLSEMKHFY RENNPKPVCV 101: SPQDSRLAAE IQEQQSLLKT YEVMVKKFQS EIQNKDSEIT QMLQKIEEAN QKRLKLEKNL KLRGMSTNEG SNGDGNMQFP DLTTELYVST YEAAAKAVHD 201: FSKPLINMMK AAGWDLDSAA NSIEPDVVYA KRPHKKYAFE SYICQRMFSG FQQKNFSVNS ESAAVMANDD TDTFFRQFLA LKDMDPLDAL GTNPDSNFGI 301: FCRSKYLLLV HPKMEASFFG NLDQRDYVTG GGHPRTAFYQ AFLKLAKSIW ILHRLAYSFD PAAKIFQVKK GSEFSDSYME SVVKNIVVDE KEENPRVGLM 401: VMPGFWIGGS VIQSRVYVSG VKVLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)