AT2G44430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: stem, male gametophyte, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT3G60110.1); Has 27183 Blast hits to 17808 proteins in 1233 species: Archae - 48; Bacteria - 2443; Metazoa - 11960; Fungi - 2852; Plants - 1222; Viruses - 306; Other Eukaryotes - 8352 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18333603..18336165 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72409.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 646 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKEEEEEAG SYNMNVDDTN NNNNYICTDN DYIEEDEDNS NTKKSQTQAW GTWEELLLAC AVKRHGFGDW DSVATEVRSR SSLSHLLASA NDCRHKYRDL 101: KRRFHEQEKT DVTATVEEEE EEEERVGNNI PWLEQLRNLR VAELRREVER YDCSILSLQL KVKKLEEERE VGEEKPDLEN ERKEERSEND GSESEHREKA 201: VSAAEESDRE NRSMNESNST ATAGEEERVC GDEPSQTRED DSGNDKNPDP DPVNKDATAA EEEEGSVSRG SEASHSDELG ESGTSESKWK RKRRKQGGAG 301: EIRSAESKSQ PLISLLDLIR SHPRGSLFER RLRSQEAKDY KSMVKQHLDI ETIQRKLKQG SYDSSSLIFY RDLQLLFTNA IVFFPLSSSE SMAAHELRAV 401: VSQEMRKETG KAGPRLIKQE ASGMRSGKAD AETSDSSLSR QKSSGPLVVC KKRRSVSAKA SPSSSSFSQK DDTKEETLSE EKDNIATGVR SSRRANKVAA 501: VVANNTKTGK GRNKQKQTES KTNSSNDNSS KQDTGKTEKK TVSADKKKSV ADFLKRLKKN SPQKEAKDQN KSGGNVKKDS KTKPRELRSS SVGKKKAEVE 601: NTPVKRAPGR PQKKTAEATA SASGKRGRDT GSTGKDNKQP KKRIRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)