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AT2G38320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.594
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 34
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 34 (TBL34); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 35 (TAIR:AT5G01620.2); Has 1346 Blast hits to 1317 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAWIeggNOG:ENOG4111BYZEMBL:AC004683EMBL:AF370310
EMBL:CP002685EnsemblPlants:AT2G38320EnsemblPlants:AT2G38320.1entrez:818412
GeneID:818412Genevisible:O80919GO:GO:0000139GO:GO:0005794
GO:GO:0016021GO:GO:0016413GO:GO:0071554Gramene:AT2G38320.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF11HOGENOM:HOG000238066InParanoid:O80919
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029971
KEGG:ath:AT2G38320OMA:WRMPHIKPANTHER:PTHR32285PANTHER:PTHR32285:SF11
PaxDb:O80919Pfam:O80919Pfam:PF13839Pfam:PF14416
PhylomeDB:O80919PIR:T02513PRIDE:O80919PRO:PR:O80919
Proteomes:UP000006548RefSeq:NP_565888.1STRING:3702.AT2G38320.1TAIR:AT2G38320
tair10-symbols:TBL34TMHMM:TMhelixUniGene:At.12776UniProt:O80919
Coordinates (TAIR10) chr2:+:16055488..16057874
Molecular Weight (calculated) 47660.10 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.44
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKRQLLMLG IRTSFHTIAA VLVAGLIFTA VFLSRNSLPK ENPQSHGVTD RGGDSGRECN LFEGKWVFDN VSYPLYKEED CKFMSDQLAC EKFGRKDLSY
101: KFWRWQPHTC DLPRFNGTKL LERLRNKRMV YVGDSLNRGQ WVSMVCMVSS VITNPKAMYM HNNGSNLITF KALEYNATID YYWAPLLVES NSDDPTNHRF
201: PDRIVRIQSI EKHARHWTNS DIIVFNSYLW WRMPHIKSLW GSFEKLDGIY KEVEMVRVYE MALQTLSQWL EVHVNPNITK LFFMSMSPTH ERAEEWGGIL
301: NQNCYGEASL IDKEGYTGRG SDPKMMRVLE NVLDGLKNRG LNMQMINITQ LSEYRKEGHP SIYRKQWGTV KENEISNPSS NADCIHWCLP GVPDVWNELL
401: YAYILDHHSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)