AT2G33790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arabinogalactan protein 30 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arabinogalactan protein 30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 4773 Blast hits to 1945 proteins in 284 species: Archae - 10; Bacteria - 247; Metazoa - 746; Fungi - 274; Plants - 1194; Viruses - 386; Other Eukaryotes - 1916 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14293862..14295237 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25762.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.58 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||
| Length | 239 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIIGKSVSL TLFALLCFTS SVFTLGVNQP GSSDPFHSLP QHLPLPPIKL PTLPPAKAPI KLPAYPPAKA PIKLPTLPPA KAPIKLPTLP PIKPPVLPPV 101: YPPKYNKTLV AVRGVVYCKA CKYAGVNNVQ GAKPVKDAVV RLVCKNKKNS ISETKTDKNG YFMLLAPKTV TNYDIKGCRA FLVKSPDTKC SKVSSLHDGG 201: KGSVLKPVLK PGFSSTIMRW FKYSVYNVGP FAFEPTCPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)