AT1G72125.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.799 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:27134168..27136257 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62265.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.41 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTTSKTSLQ EEYVIDAVDH RGFSARRSIT GRWRAAWFII GVEVAERFAN YGIGSNLISY LTGPLGQSTA VAAANVNAWS GISTILPLLG AFVADAFLGR 101: YITIIIASFI YVLGLAFLTL SAFLIPNNTE VTSSPSSFLN ALFFFSLYLV AIGQSGHKPC VQAFGADQFD EKNPQENSDR SSFFNWWYLS MCAGIGLAIL 201: VVVYIQENVS WALGFGIPCV FMVISLVLFV LGRKSYRFSK TRQEEETNPF TRIGRVFFVA FKNQRLNSSD LCKVELIEAN RSQESPEELS FLNKALLVPN 301: DSDEGEVACK SRDVEDATAL VRLIPVWLTT LAYAIPFAQY MTFFTKQGVT MERTIFPGVE IPPASLQVLI SISIVLFVPI YDRVLVPIGR SITKDPCGIT 401: TLKRIGTGMV LATLTMVVAA LVESKRLETA KEYGLIDQPK TTLPMSIWWL FPQYMLLGLA DVHTLVGMQE FFYSQVPTEL RSLGLAIYLS AMGVGSLLSS 501: LLIYLIDLAT GGDAGNSWFN SNLNRAHLDY FYWLLAVVSA VGFFTFLFIS KSYIYRRVDV V |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)