AT1G70630.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.691 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: xyloglucanase 113 (TAIR:AT2G35610.1); Has 427 Blast hits to 427 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:26632118..26633991 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61925.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSRIEAYQS DIAVLMDPET VLLPDFISAL SYAHELGRDW LLVSSSVEIP RFPFHWDETR HFWRQDNGKR VRFRELQKMI SLRSLQSNSS ASKMIMAWNN 101: IDMPLHCGVL PPFLYQRGTH NQWIINEAMS CKRRFVFDAT STISSFFLGN AENIYNRSDN VSEPKTRNWE YVGNSHLGQL YGSLYSRSYT LPKLLKCNRR 201: YIFVSASERS TDLSIPKGKS LGFRTREKIS ACITRTKSRS LKLDFVQKDE TVPPLKFPFD LESLLPLVAD KNRTVVLSVA GYSYKDMLMS WVCRLRRLKV 301: PNFLVCALDD ETYQFSILQG LPVFFDPYAP KNISFNDCHF GSKCFQRVTK VKSRTVLKIL KLGYNVLLSD VDVYWFRNPL PLLQSFGPSV LAAQSDEYNT 401: TAPINRPRRL NSGFYFARSD SPTIAAMEKV VKHAATSGLS EQPSFYDTLC GEGGAYRLGD DRCVEPETNL TVQFLDRELF PNGAYGDLWL KEDVRAECEK 501: KHCFVLHNNW ISGRLKKLER QMMKGLWEYD ASMRMCV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)