AT1G65220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G36230.1); Has 791 Blast hits to 789 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 56; Plants - 172; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24226204..24228799 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47062.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSKEKPTLG GTRIKTRKRN IAAPLDPAAF SDALVQIYLD NAGDLELVAR SLESSDLNFS RYGDIFFEVV FIGGRTQTGS VKSDEGERHP YSIIDCEPKR 101: EAILPSVVYI QKILRRKAFL IKNLENVTRR FLQSLELFEE NERKKLAIFT ALAFSQKLSG LPAETVFQPL LKDTLVAKGI VLNFVTDFFN EYLVENSLDD 201: LISILRRGKM DDKLLEFLPP TKRTTESFAE HFTKAGLTAL VEYNERKIFE VKLKEIKAVL TSQVTEEINV DEVTEMVKQQ VKDAKLPETE VVHVIWDGIM 301: NAVQWSGKNQ QQNSNAVLRQ VKTWAPLLNT LCSTGNMEME LMYKVQMQCY EDAKLMKVFP EVVRSLYELD VLAEDTILHW YRKGTNPKGR QTFVKGLEPF 401: VNWLEEAEEE E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)