AT1G64080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23785230..23786557 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44513.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAFSLLNYW KNSGGAVTFL PHSSESSSSS LCRYSAGESI GTTTIVTSVT ETEDEEADEN DDEGPFFDLE FALPAEEEDT DGGVGREGDS DCTDGGCEFK 101: FTLSSCSGGE DRVDPDSLDD VFFKETIVEE VEPPTSSEQQ TCSVKAPAAQ LSASILKTAT KLRVFMLGMK KSKLIQAKSE ANFGSEDLDK QTHPPPPLSL 201: SPESQQKSTV TVNLKVEEVP IISLFSRENS SKNSSSSSSS SSSSSSSLKK QNGNESVVSD EKRFVMMQKY LKKVKPLYIR VSRRYGEKLR HSGQLTAPSS 301: ARSTAEKADS PVATKTNNKP GNNINIPAGL KVVRKHLGKS RSSSSTATTP SSTTATVTTQ SESRRRDDSL LQQQDSIQSA ILHCKRSFNS SRDKDPSVLP 401: RSVSEPSSYE K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)