AT1G47560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst complex component sec3B | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component sec3B (SEC3B); CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3A (TAIR:AT1G47550.1); Has 437 Blast hits to 422 proteins in 153 species: Archae - 2; Bacteria - 6; Metazoa - 176; Fungi - 108; Plants - 103; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17466751..17473190 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99927.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 887 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKSSADDEE LRRACEAAIE GTKQSIVMSI RVAKSRGVWG KSGKLGRQMA KPRVLALSVK SKGPRKKAIL RVMKYSSGGV LEPAKMYDLK HLSKVEVITS 101: DPSGCTFTLG FDNLRSQSVA PPQWTMRNTD DRNRLLVCIL NICKDVLGRL PKVVGIDIVE MALWAKDNTP VVTTQRSTED GEPVAESVTE SALKVTVEKE 201: LVSQAEEEDM EALLGTYVIG IGEAEAFSER LKRELQALEA ANVHAILESE PLVDEVLNGL EAATNIVDDM DEWLGIFNIK LRHMREDIES IEIRNNKLEM 301: QSVNNKALIE ELDKVIERLR VPSEYAASLT GGSFDEADML QNIEACEWLA KALRGLEVPN LDPIYANMRA VKEKRAELEK LKATFVRRAS EFLRDYFASL 401: VDFKFSDKSY FSQRGQLKRP DHADLRYKCR TYARLMQHLK GLNKNCLGPL RKAYCSSLNL LLRREAREFA KELRASTKVS RNPTVWLEGS TGSSQNANTD 501: TSAVSDAYAK MLTIFIPLLV DESSFFAHFM CFEVPALAPP GGAGNDKKSQ SNNDDGNDND DLGIMDIDEA DKKPGKNSPD LTALNESLQD LLDGIQEDFY 601: AVVDWAYKID PLRSISMHGI TERYLSGQKA DAAGFVRLLL GDLESRISMQ FSHFVDEACH QIEKNERNVR QMGVLPYIPR FAALATRMEQ YIQGQSRNLV 701: DQAYTKFVSI LFVTLEKIAQ QDPKYADILL LENYAAFQTC LFDLANVVPT LAKFYDQAME AYEQACTRHI SMIIYYQFER LFLFDKKIKD LMYTITPEEI 801: PFQLGLSKVE LRKMLKSSLS GVDKSIAAMY KKLQKNLASE ELLPSLWDKC KKEFLDKYES FVQLVAKVYP SENVPGVTEM RGLLASM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)