AT1G25290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RHOMBOID-like protein 10 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8867157..8868945 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38224.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.36 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSVSLSHHN LWPPESGSTA FRGFATAASV HACHHVSRHL RLDFHLRSSL KKLQHFSDDA RMKFARYQRV FVFNGANFLK SRVDIRLSQS SPFVCFFNGG 101: ESRLNPRGGE EGSSNPETSK RNTVNGRRWT NVLLAINVIM YIAQIASDGK VLTWGAKINS LIERGQLWRL ATASVLHANP MHLMINCYSL NSIGPTAESL 201: GGPKRFLAVY LTSAVAKPIL RVLGSAMSYW FNKAPSVGAS GAIFGLVGSV AVFVIRHKQM VRGGNEDLMQ IAQIIALNMA MGLMSRRIDN WGHIGGLLGG 301: TAMTWLLGPQ WKYEYTTRDG RRVFMDSAPI PLLLRWRNEQ RRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)