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AT1G09690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation protein SH3-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09590.1); Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 709; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
BioGrid:22727BioGrid:22738eggNOG:COG2139eggNOG:KOG1732
EMBL:AC000132EMBL:AC003970EMBL:AF370227EMBL:AY059119
EMBL:AY059923EMBL:AY081656EMBL:BT000775EMBL:CP002684
EnsemblPlants:AT1G09590.1EnsemblPlants:AT1G09690EnsemblPlants:AT1G09690.1entrez:837486
entrez:837497Gene3D:2.30.30.70GeneID:837486GeneID:837497
Genevisible:Q43291GO:GO:0003735GO:GO:0005730GO:GO:0006412
GO:GO:0009507GO:GO:0022625GO:GO:0022626Gramene:AT1G09590.1
Gramene:AT1G09690.1hmmpanther:PTHR20981HOGENOM:HOG000194513InParanoid:Q43291
InterPro:IPR001147InterPro:IPR008991InterPro:IPR018259KEGG:ath:AT1G09590
KEGG:ath:AT1G09690KO:K02889OMA:GTGTIQKPANTHER:PTHR20981
PaxDb:Q43291Pfam:PF01157Pfam:Q43291PhylomeDB:Q43291
PIR:G86230PRIDE:Q43291PRO:PR:Q43291PROSITE:PS01171
ProteinModelPortal:Q43291Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_563847.1RefSeq:NP_563849.1scanprosite:PS01171SMR:Q43291
STRING:3702.AT1G09690.1SUPFAM:SSF50104TAIR:AT1G09590TAIR:AT1G09690
UniGene:At.23363UniGene:At.42214UniProt:Q43291
Coordinates (TAIR10) chr1:-:3136407..3137430
Molecular Weight (calculated) 18653.90 Da
IEP (calculated) 11.12
GRAVY (calculated) -0.69
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MPAGHGVRAR TRDLFARPFR KKGYIPLSTY LRTFKVGDYV DVKVNGAIHK GMPHKFYHGR TGRIWNVTKR AVGVEVNKQI GNRIIRKRIH VRVEHVQQSR
101: CAEEFKLRKK KNDELKAAAK ANGETISTKR QPKGPKPGFM VEGMTLETVT PIPYDVVNDL KGGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)