AT5G48780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19777511..19779604 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76346.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSSSSSSQ KFYVFLSFQG LDTRRTFVSH LRRSLDRKGI KTFEDENESL RGELDSSAVY QTIGESKVAV VLISVNYASS PLCLDSLLKI LKFHQSGSLV 101: LIPIFYEVDP MDVRKQIGKL YEAFSLHERE NPEKVQTWRQ ALSQLVSIPG GQYSEIWDGD AELIHQITVD IWNIFVASKS SDLCGLVGMD RHMKAMYRLL 201: DLGLKDEVRH IKIWGSRDIG KTEFAKYLYE EILHNFDTHV MLKAPQRISR FEEVRLAEYV CLRLEKARTL SKTSKDTASR FLLVLDNVNE SFDPIRKLAR 301: VISSFGPGSR IITTTRNLQF SSTSPLPFQY EVLGLEFSEA LQLFCLHAFE QTHPFLGFED LSCRAVKLAG GFPLSLKRLG SRFSGRKKDE WEVILFGYER 401: STVNGVINPE KNSLDGLYEY SSIMETFSSQ PISSTTRSFE DLVGMNHRMQ ALSALLELES DKEVRVVGIW GTGGIGKTTL SRYAYERISQ QFHTHAFLEN 501: AQESSSSCLE ERFLSKAIQR EALAVRNSKD CPEIMKSLIQ HRKVLLIVDD VDNVKTLEEV FKITSWLVPG SRVIVTARDE SFLLASGVKY IFEVKGLRFD 601: QALQLFYQFA FKQKSPPVRF RQLSVRAIKL VGFLPLALKV TGSMLYRKKE SYWETILQCF EEKQNKGTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)