AT5G40360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 115 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative transcription factor (MYB115) | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 115 (MYB115); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 118 (TAIR:AT3G27785.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16145220..16146579 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41601.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||
| Length | 359 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYHQNLISST PNQNSNPHDW DIQNPLFSIH PSAEIPSKYP FMGITSCPNT NVFEEFQYKI TNDQNFPTTY NTPFPVISEG ISYNMHDVQE NTMCGYTAHN 101: QGLIIGCHEP VLVHAVVESQ QFNVPQSEDI NLVSQSERVT EDKVMFKTDH KKKDIIGKGQ WTPTEDELLV RMVKSKGTKN WTSIAKMFQG RVGKQCRERW 201: HNHLRPNIKK NDWSEEEDQI LIEVHKIVGN KWTEIAKRLP GRSENIVKNH WNATKRRLHS VRTKRSDAFS PRNNALENYI RSITINNNAL MNREVDSITA 301: NSEIDSTRCE NIVDEVMNLN LHATTSVYVP EQAVLTWGYD FTKCYEPMDD TWMLMNGWN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)