AT5G11870.1::SUBA5

AT5G11870.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.767
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT1G27290.1:None: PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT5G47180.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT1G34780.1:None: PMID:24833385 (2014): AT1G35620.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT3G28220.1:None: PMID:24833385 (2014): AT1G16170.1:None: PMID:24833385 (2014): AT5G03345.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT1G13770.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT3G13175.1:None: PMID:24833385 (2014): AT5G52420.1:None: PMID:24833385 (2014): AT4G37370.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT1G31812.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT2G20130.1:None: PMID:24833385 (2014): AT4G05370.1:None: PMID:24833385 (2014): AT4G05380.1:None: PMID:24833385 (2014): AT4G38690.1:None: PMID:24833385 (2014): AT2G41705.1:None: PMID:24833385 (2014): AT1G11940.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT2G43420.1:None: PMID:24833385 (2014): AT2G28315.1:None: PMID:24833385 (2014): AT3G10640.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT3G55440.1:None: PMID:24833385 (2014): AT1G65690.1:None: PMID:24833385 (2014): AT5G11890.1:None: PMID:24833385 (2014): AT1G34640.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT2G22425.1:None: PMID:24833385 (2014): AT2G27290.1:None: PMID:24833385 (2014): AT4G30500.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT3G62560.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

no coexpression data

AT1G31812.1 cytosol
AT4G05380.1 cytosol
AT3G55440.1 cytosol
AT3G12180.1 endoplasmic reticulum
AT5G52420.1 endoplasmic reticulum
AT5G47180.1 endoplasmic reticulum
AT5G03345.1 endoplasmic reticulum
AT4G37370.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT3G62560.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT3G13175.1 endoplasmic reticulum
AT1G07860.1 endoplasmic reticulum
AT2G22425.1 endoplasmic reticulum
AT2G20130.1 endoplasmic reticulum
AT1G27290.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT1G35620.1 endoplasmic reticulum
AT1G34640.1 extracellular
AT4G05370.1 extracellular
AT1G11940.1 golgi
AT4G37680.1 golgi
AT1G17280.1 golgi
AT4G30850.1 golgi
AT4G14455.1 golgi
AT3G66654.1 golgi
AT1G59730.1 golgi
AT4G30500.1 endoplasmic reticulum, golgi
AT2G26180.1 nucleus
AT3G10640.1 nucleus
AT2G28315.1 plasma membrane
AT5G11890.1 plasma membrane
AT5G06320.1 plasma membrane
AT1G16170.1 plasma membrane
AT4G38690.1 plasma membrane
AT1G34780.1 plasma membrane
AT2G41705.1 plasma membrane
AT2G43420.1 plasma membrane
AT1G65690.1 plasma membrane
AT2G27290.1 plastid
AT1G13770.1 vacuole
AT5G49540.1 vacuole
AT3G28220.1 vacuole

Description (TAIR10)

protein_coding : Alkaline phytoceramidase (aPHC)

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Alkaline phytoceramidase (aPHC); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: integral to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); BEST Arabidopsis thaliana protein match is: senescence associated gene 18 (TAIR:AT1G71190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410ITYF	eggNOG:ENOG410YEEP	EMBL:AL163812	EMBL:BT010860
EMBL:BT011325	EMBL:CP002688	EnsemblPlants:AT5G11870	EnsemblPlants:AT5G11870.1
entrez:831060	ExpressionAtlas:Q9LYI6	GeneID:831060	GO:GO:0016021
Gramene:AT5G11870.1	hmmpanther:PTHR34368	hmmpanther:PTHR34368:SF2	HOGENOM:HOG000225581
InterPro:IPR008901	Pfam:PF05875	PhylomeDB:Q9LYI6	PIR:T48546
Proteomes:UP000006548	RefSeq:NP_196748.1	STRING:3702.AT5G11870.2	TAIR:AT5G11870
TMHMM:TMhelix	UniGene:At.32201	UniProt:Q9LYI6

Coordinates (TAIR10)

chr5:+:3825720..3827241

Molecular Weight (calculated)

29818.20 Da

IEP (calculated)

9.74

GRAVY (calculated)

0.64

Length

262 amino acids

Sequence (TAIR10)
(BLAST)

001: MVWLTNQQIG RWKRKRILVV GSFLCWSIIM FITPKVPLDS FRHHIFADKR NFMGVPNTLN VMTNFPFLIV GVLGFVLCIG GSFFNISLNG EIWGWTLFYA
101: GIASLAFGSA FYHLKPDDNR IVWDTLPILI AYSSLFSSFL VERAGEKVGL SCLILLLFIS CLSVAYARVF NDLRLCMTFQ LIPCLVIPVM AVLLPPKYTH
201: SRFWLWATAA YTIAKIEGLA DNKIYNANRY IISGHSLEHL CSAVATLLLT IMLLYRSIRF NR