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AT5G09700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1).
Protein Annotations
eggNOG:COG1472EMBL:CP002688EnsemblPlants:AT5G09700EnsemblPlants:AT5G09700.1
entrez:830829Gene3D:3.20.20.300Gene3D:3.40.50.1700GeneID:830829
GO:GO:0004553GO:GO:0005975Gramene:AT5G09700.1hmmpanther:PTHR30620
hmmpanther:PTHR30620:SF40InParanoid:F4KE06InterPro:IPR001764InterPro:IPR002772
InterPro:IPR017853InterPro:IPR026891InterPro:IPR026892KEGG:ath:AT5G09700
KO:K15920PANTHER:PTHR30620PaxDb:F4KE06Pfam:PF01915
Pfam:PF14310PRIDE:F4KE06ProteinModelPortal:F4KE06Proteomes:UP000006548
RefSeq:NP_196532.2SMART:SM01217SMR:F4KE06STRING:3702.AT5G09700.1
SUPFAM:0046644SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT5G09700
UniGene:At.75273UniProt:F4KE06
Coordinates (TAIR10) chr5:-:3003720..3005566
Molecular Weight (calculated) 57206.60 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.19
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVQAGYEPA DHSGFQPYGP NLRLVHTVHS QLGLGSPDLR VCFRYIVSDC DSLGILYGSQ HYTKTPEEAA AKSILAGLDL NCGSFLGNHT ENAVKKGLID
101: EAAINKAISN NFATLMRLGF FDGNPKNQPY GGLGPKDVCT VENRELAVET ARQGIVLLKN SAGSLPLSPS AIKTLAVIGP NANVTKTMIG NYEGVACKYT
201: TPLQGLERTV LTTKYHRGCF NVTCTEADLD SAKTLAASAD ATVLVMGADQ TIEKETLDRI DLNLPGKQQE LVTQVAKAAR GPVVLVIMSG GGFDITFAKN
301: DEKITSIMWV GYPGEAGGIA IADVIFGRHN PSGKLPMTWY PQSYVEKVPM TNMNMRPDKS NGYLGRTYRF YIGETVYAFG DGLSYTNFSH QLIKAPKFVS
401: LNLDESQSCR SPECQSLDAI GPHCEKAVGE RSDFEVQLKV RNVGDREGTE TVFLFTTPPE VHGSPRKQLL GFEKIRLGKK EETVVRFKVD VCKDLGVVDE
501: IGKRKLALGH HLLHVGSLKH SFNISV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)