AT5G07780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin-binding FH2 (formin homology 2) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2479707..2482638 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52413.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 464 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLVDISGAY SLVPLPPPPP PLMRRRAPLP PPPPPPLMRR RAPPPPPPPL MRRRAPPPPP PPPLPRPCSR PPKTKCSLKP LHWVKKTRAL PGSLWDELQR 101: RQECRDIEDE QILCAIELSV SEIETIFSLG AKPKPKPEPE KVPLIDLRRA TNTEIRLMLL NIRLPDMIAA AMAMDESRLD DFDQIENLIN LFPTKEDMKF 201: LLTYTGDKGN CEQLFQYLQE VVKVPRVESK LRVFSFKIQF GTQITKLTKG LNAVNSACEE IRTSQKLKDI MENILCLGNI LNQGTGRGRA VGFRLDSLLI 301: LSETRADNSK MTLMHYLCKV LASKASDLLD FHKDLESLES ASKIQLKSLA EEIQAITKGL EKLKQELTAS ETDGPVSQVF RKLLKEFISN AETQVATVMA 401: LYYPARGNAE ALAHYFGYHY PFEQVTATLL SFIRLFKKAH EENVKQAELE KKKAAKEAEM EKTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)