AT4G24260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyl hydrolase 9A3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycosyl hydrolase 9A3 (GH9A3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A1 (TAIR:AT5G49720.1); Has 1666 Blast hits to 1648 proteins in 232 species: Archae - 2; Bacteria - 516; Metazoa - 186; Fungi - 17; Plants - 908; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12577871..12580133 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69588.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 620 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYGRDPWGGP LEINAADSMT DDDRSRNLQD LDRATPSRPL DETQQSWLLG PKVLKKKKYV DLGCILVSRK IFLWTLGTIV VTALLSGFIT LIVKTLPHHH 101: HKEPPPDNYT IALRTALKFF NAQQSGKLPK NIYNVSWRHD SCLQDGKGDP GQCYKDLVGG YYDAGDSIKF NFPMSYAMTM LSWSVIEYSA KYQAAGELEH 201: VKELIKWGTD YFLKTFNSSA DNIYVMVEQV GSGVSGRGSE LHNDHYCWMR PEDIHYKRTV SQCYSSCSDL AAEMAAALAS ASIVFKDNRL YSKNLVHGAK 301: TLYRFATTSR NRYSQNGKES SKFYNSSMFE DELLWGGAWL YYATGNVTYL ERVTSHHMAE KAGAFGNSPY YGVFSWDNKL PGAQLLLTRM RLFLSPGYPY 401: EDMLSEFHNQ TGRVMCSYLP YYKKFNRTNG GLIQLNHGAP QPLQYVANAA FLAALFSDYL EAADTPGWYC GPNFYTTEFL RNFSRSQIDY ILGKNPRKMS 501: YVVGYGQRYP KQVHHRGASI PKNMKETCTG GFKWKKSKKN NPNAINGAMV AGPDKHDGFH DIRTNYNYTE PTLAGNAGLV AALVALSGEK AVGGIDKNTM 601: FSAVPPLVMA TPPPPAPWTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)