AT4G19680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.824 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : iron regulated transporter 2 | ||||||||||||
| Curator Summary (TAIR10) |
encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. | ||||||||||||
| Computational Description (TAIR10) |
iron regulated transporter 2 (IRT2); FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1381 Blast hits to 1243 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 183; Fungi - 601; Plants - 483; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10703385..10704255 | ||||||||||||
| Molecular Weight (calculated) | 27696.20 Da | ||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||
| GRAVY (calculated) | 0.59 | ||||||||||||
| Length | 257 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTKLVYIL LILFTFTVSP AISTAPEHCD SGFDNPCINK AKALPLKIVA IVAILTTSLI GVTSPLFSRY ISFLRPDGNG FMIVKCFSSG IILGTGFMHV 101: LPDSFEMLSS KCLSDNPWHK FPFAGFVAMM SGLVTLAIDS ITTSLYTGKN SVGPVPDEEY GIDQEKAIHM VGHNHSHGHG VVLATKDDGQ LLRYQVIAMV 201: LEVGILFHSV VIGLSLGATN DSCTIKGLII ALCFHHLFEG IGLGGCILQV RIYIHTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)