AT4G16730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : terpene synthase 02 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9403119..9406003 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63181.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.49 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSISPLAR EYIYVKEVET AEKAILFKEE VRKTLNEIEG SIEQLEMIDS LQRLGISYHY KHEIHDILRK IHDQHGEIER ETQDLHATSL EFILLRQHGF 101: DVSQDAFDVF ISETGEFRKT LHSDIKGLLS LYEASYFSMD SEFKLKETRI YANKRLSEFV AESSKTICRE DETYILEMVK RALETPYHWS IRRLEARWYI 201: NVYEKKHEMN PLLLEFAAID FNMLQANHQE ELKLISSWWN STGLMKQLDF VRDRITESYF WTIGIFYEPE FKYCRKILTK IFMLIVIMDD IYDIYGTLEE 301: LELFTNVVEK WDVNHVERLP NYMRMCFLFL YNEINQIGYD VLRDKGLNVI PYLKQVWTDL FKTFLTESKW YKTGHKPSFE EYMQNGVISS SVPTILLHLF 401: SVLSDHISDQ TLTDDSKNHS VVRSCATILR LANDLATSTE EMARGDSPKS VQCYMYETRA SEEEARRHMQ SMISDSWDII NSDLKTAHTS SLPRGFLAAA 501: ANLNRVVQCI YRHGDGHGSP EKTKTVDYIQ SVLFNPVPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)