AT4G13240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RHO guanyl-nucleotide exchange factor 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RHO guanyl-nucleotide exchange factor 9 (ROPGEF9); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 8 (TAIR:AT3G24620.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7680153..7682414 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58175.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS 101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE 201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD 301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI 401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY 501: LEKLENLNGF RSPKDRH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)