AT4G04220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 46 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 46 (RLP46); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 12 (TAIR:AT1G71400.1); Has 134299 Blast hits to 33174 proteins in 1147 species: Archae - 55; Bacteria - 10381; Metazoa - 36724; Fungi - 1470; Plants - 75311; Viruses - 4; Other Eukaryotes - 10354 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2033427..2035946 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90843.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 811 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKQCLLSCF LFFCFFIPQL SFSCPQDQRQ SLLEFKNLLI HNIKDNYTAF EELGTWRPNS DCCKWLRVTC NASSPSKEVI DLNLFLLIPP GLVSSSILRP 101: ILRINSLVGL DVSFNNIQGE IPGYAFVNLT SLISLDMCCN RFNGSIPHEL FSLTNLQRLD LSRNVIGGTL SGDIKELKNL QELILDENLI GGAIPSEIGS 201: LVELLTLTLR QNMFNSSIPS SVSRLTKLKT IDLQNNFLSS KIPDDIGNLV NLSTLSLSMN KLSGGIPSSI HNLKNLETLQ LENNNGLSGE IPAAWLFGLQ 301: KLKVLRLEGN NKLQWNNNGY VFPQFKLTHL SLRSCGLEGN IPDWLKNQTA LVYLDLSINR LEGRFPKWLA DLKIRNITLS DNRLTGSLPP NLFQRPSLYY 401: LVLSRNNFSG QIPDTIGESQ VMVLMLSENN FSGSVPKSIT KIPFLKLLDL SKNRLSGEFP RFRPESYLEW LDISSNEFSG DVPAYFGGST SMLLMSQNNF 501: SGEFPQNFRN LSYLIRLDLH DNKISGTVAS LISQLSSSVE VLSLRNNSLK GSIPEGISNL TSLKVLDLSE NNLDGYLPSS LGNLTCMIKS PEPSAMTIRP 601: YFSSYTDIPN IERLIEIESE DIFSLVVNWK NSKQVLFDRN FYLYTLLDLS KNKLHGEIPT SLGNLKSLKV LNLSNNEFSG LIPQSFGDLE KVESLDLSHN 701: NLTGEIPKTL SKLSELNTLD LRNNKLKGRI PESPQLDRLN NPNIYANNSG ICGMQIQVPC FPTQTKQPAE EKEEEDKEEE ETIFSWNAAA IGCSCGFLIA 801: VVFMSYNELW K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)