AT3G22670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04130.2); Has 39777 Blast hits to 13686 proteins in 296 species: Archae - 5; Bacteria - 61; Metazoa - 326; Fungi - 524; Plants - 37538; Viruses - 0; Other Eukaryotes - 1323 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8017771..8019459 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64013.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 562 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTKLRISKL VSYTLPRRIF QRRFLVTNNT AEESPIVAAE SPELPSWIKD FLSNKPSSSS SSVSKDDEDF VIPSLANWVE SQKFSRQQVS EGNVVKKPVE 101: DIDKVCDFLN KKDTSHEDVV KELSKCDVVV TESLVLQVLR RFSNGWNQAY GFFIWANSQT GYVHSGHTYN AMVDVLGKCR NFDLMWELVN EMNKNEESKL 201: VTLDTMSKVM RRLAKSGKYN KAVDAFLEME KSYGVKTDTI AMNSLMDALV KENSIEHAHE VFLKLFDTIK PDARTFNILI HGFCKARKFD DARAMMDLMK 301: VTEFTPDVVT YTSFVEAYCK EGDFRRVNEM LEEMRENGCN PNVVTYTIVM HSLGKSKQVA EALGVYEKMK EDGCVPDAKF YSSLIHILSK TGRFKDAAEI 401: FEDMTNQGVR RDVLVYNTMI SAALHHSRDE MALRLLKRME DEEGESCSPN VETYAPLLKM CCHKKKMKLL GILLHHMVKN DVSIDVSTYI LLIRGLCMSG 501: KVEEACLFFE EAVRKGMVPR DSTCKMLVDE LEKKNMAEAK LKIQSLVQSK TMIDSHSPLS VS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)