AT3G20800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.776 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cell differentiation, Rcd1-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 491 Blast hits to 488 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 135; Plants - 110; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7271412..7273897 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34713.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANLPSSLSM GTPFGGPSTS AQNPTGAPAN KDRNLASAEQ LVLDLSNPEL RENALLELSK KRELFQDLAP LLWNSFGTIA ALLQEIVSIY SVLAPPNLTP 101: AQSNRVCNSL ALLQCVASHS DTRMLFLKAH IPLYLYPFLN TTSKSRPFEY LRLTSLGVIG ALVKVDDTEV ISFLLSTEII PLCLRTMEMG SELSKTVATF 201: IVQKILLDDV GMDYICTTAE RFFAVGRVLG NMVQSLVEQP SPRLLKHIIR CYLRLSDNPR ACAALASCLP DSLRDGSFSN CLREDPTARR WLQQLVHNVG 301: VGRVPTHQGG GFEHML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)