AT1G34140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : poly(A) binding protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
poly(A) binding protein 1 (PAB1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:12433356..12434735 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45907.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 407 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVLNYCKLK GKPMRIMFSE RDPSNRMSGR GNVFVKNLDE SIDNKQLCDM FSAFGKVLSC KVARDASGVS KGYGFVQFYS DLSVYTACNF HNGTLIRNQH 101: IHVCPFVSRG QWDKSRVFTN VYVKNLVETA TDADLKRLFG EFGEITSAVV MKDGEGKSRR FGFVNFEKAE AAVTAIEKMN GVVVDEKELH VGRAQRKTNR 201: TEDLKAKFEL EKIIRDMKTR KGMNLYVKNL DDSVDNTKLE ELFSEFGTIT SCKVMVHSNG ISKGVGFVEF STSEEASKAM LKMNGKMVGN KPIYVSLAQC 301: KEQHKLHLQT QFNNPPPSPH QQPIFSQVVA PATMLSQQTP LRGYNFQPYS MCGSRMPNSC PPISIPNFMV PQPFRPTLYP PAPLVGLYGS LPQPLLQPNL 401: WNPYRRF |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)