AT1G30560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.864 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity, glycerol-3-phosphate transmembrane transporter activity; INVOLVED IN: glycerol-3-phosphate transport, transport, transmembrane transport; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: root hair specific 15 (TAIR:AT4G25220.1); Has 20742 Blast hits to 20659 proteins in 2173 species: Archae - 379; Bacteria - 17283; Metazoa - 812; Fungi - 1059; Plants - 388; Viruses - 0; Other Eukaryotes - 821 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10824761..10826293 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55092.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASWTSSEFL YEEVKPPGIH FLERFRRSGK LSFKQYQAMV FVLTFIAYIA FHATRKPNSI VKGTLSEQPT GHFKGADKGG WAPFDGPDGT ALLGQIDLAF 101: LSVYAVGMFV AGHLGDRLDL RTFLTIGMVG TGVCTALFGV AFWANIHAFY YFLAIQTLAG WFQSIGWPCV VAVLGNWFDK KRRGVIMGVW SAHTSLGNII 201: GTLIATGLLK FGWGWSFVGP ALLITFLGIV VYLFLPVNPH AVEAERDGSE VDSTMRLGDT ITESFLSSRT STGFDRRAVG FLAAWKIPGV APFAFCLFFT 301: KLVSYTFLYW LPFYVSQTEI GGEQLSQETS GNLSTLFDVG GVVGGILAGY FSDQLDGRAI TAGGFIYLTI PALFLYRIYG HVSMTINIIL MFVAGLFVNG 401: PYALITTAVA ADLGTHKSLK GNARALATVT AIIDGTGSVG AAIGPVLTGY IAAISWDAVF YMLMTAALIS GLLLTTLIIE EVKTLLYGSS EEDHEVAAAS 501: TSRPPIDVLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)