AT1G20990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G16050.1); Has 1603 Blast hits to 716 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 0; Plants - 1573; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7330524..7331946 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33671.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 319 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRTKSIVIN SNSKNDTSTI SATTALRRSA SNTTPSAAVV RTNDLNKKPR PRSVEFPASP QLVQGEEMVH FGHPQHVLVK VELPDIYTCA GCKEEGAGVR 101: YVCQECDYQL HEFCALAPPQ LKSHPFHYQH QLLFFAKPAK GGIVKSKCDV CGRSPKGYTF RCKACSFQMH PGCAMLSPSL SSSSLHHHPL RLLPSSSAGS 201: TTGGDSGGFL CGECKRGKRT GRVYRCTVCD YHLHAVCAKD AAVNGLRANG HKGRDKSPAV LGTAARLASQ VVIDFLGGII DGLGEGVGEA IIDGVTRGGG 301: GGGGGNGGGT RVIPRVRGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)