suba logo
ATMG00280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23390424 (2013): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribulose bisphosphate carboxylase large chain, catalytic domain
Curator
Summary (TAIR10)		 hypothetical protein
Computational
Description (TAIR10)		 Ribulose bisphosphate carboxylase large chain, catalytic domain; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, magnesium ion binding; INVOLVED IN: carbon fixation; LOCATED IN: plastid; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:AT2G07732.1).
Protein Annotations
BioCyc:ARA:AT2G07732-MONOMERBioCyc:ARA:ATMG00280-MONOMERBioCyc:MetaCyc:ATMG00280-MONOMEReggNOG:COG1850
EMBL:AC006225EMBL:Y08501EnsemblPlants:ATMG00280EnsemblPlants:ATMG00280.1
entrez:3371324Gene3D:3.20.20.110GeneID:3371324Genevisible:P93292
GO:GO:0000287GO:GO:0005739Gramene:ATMG00280.1hmmpanther:PTHR23321
hmmpanther:PTHR23321:SF31HOGENOM:HOG000113434InParanoid:P93292InterPro:IPR000685
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39KEGG:ath:ArthMp025OMA:WIDYFIF
PaxDb:P93292Pfam:P93292Pfam:PF00016PhylomeDB:P93292
PRIDE:P93292ProteinModelPortal:P93292Proteomes:UP000006548RefSeq:NP_085496.1
SMR:P93292STRING:3702.ATMG00280.1SUPFAM:SSF51649TAIR:ATMG00280
tair10-symbols:ORF110AUniProt:P93292
Coordinates (TAIR10) chrM:-:77819..78151
Molecular Weight (calculated) 12665.20 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.48
Length 110 amino acids
Sequence (TAIR10)
(BLAST) 		001: MNNAAKRADC WFGAKNYGRA VYECLRGGLY FTKDDENVNS QPFMRWRDRF LFCAEAVYKA QAETGGIKGH YLNATAGTCE EMIKRAVFAR ELGVPIVMHD
101: YLNRGIHRKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)