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ATCG01120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : chloroplast ribosomal protein S15
Curator
Summary (TAIR10)		 encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex
Computational
Description (TAIR10)		 chloroplast ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid small ribosomal subunit, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068).
Protein Annotations
eggNOG:COG0184eggNOG:KOG2815EMBL:AP000423EnsemblPlants:ATCG01120
EnsemblPlants:ATCG01120.1entrez:844799Gene3D:1.10.287.10GeneID:844799
Genevisible:P56805GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0009507Gramene:ATCG01120.1HAMAP:MF_01343_Bhmmpanther:PTHR23321
hmmpanther:PTHR23321:SF30HOGENOM:HOG000040097InParanoid:P56805InterPro:IPR000589
InterPro:IPR005290InterPro:IPR009068KEGG:ath:ArthCp081KO:K02956
OMA:NRVRYKEPaxDb:P56805Pfam:P56805Pfam:PF00312
PRIDE:P56805PRO:PR:P56805PROSITE:PS00362ProteinModelPortal:P56805
Proteomes:UP000006548RefSeq:NP_051116.1scanprosite:PS00362SMART:SM01387
SMR:P56805STRING:3702.ATCG01120.1SUPFAM:SSF47060TAIR:ATCG01120
tair10-symbols:RPS15TIGRfam:TIGR00952TIGRFAMs:TIGR00952UniProt:P56805
Coordinates (TAIR10) chrC:-:123296..123562
Molecular Weight (calculated) 10719.20 Da
IEP (calculated) 11.45
GRAVY (calculated) -0.79
Length 88 amino acids
Sequence (TAIR10)
(BLAST) 		1: MIKNIVISFE EQKEESRGSV EFQVFSFTNK IRRLTSHLEL HRKDYLSQRG LRKILGKRQR LLAYLSKKNR VRYKELINQL NIRELKTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)