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ATCG00800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : structural constituent of ribosome
Curator
Summary (TAIR10)		 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex
Computational
Description (TAIR10)		 RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid small ribosomal subunit, chloroplast, nucleoid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Ribosomal protein S3, N-terminal (InterPro:IPR008282), K homology-like, alpha/beta (InterPro:IPR015946), Ribosomal protein S3, conserved site (InterPro:IPR018280), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, bacterial (InterPro:IPR005704); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome;protein binding (TAIR:ATMG00090.1).
Protein Annotations
BioGrid:29925eggNOG:COG0092eggNOG:ENOG410J9THEMBL:AP000423
EnsemblPlants:ATCG00800EnsemblPlants:ATCG00800.1entrez:844719Gene3D:3.30.1140.32
Gene3D:3.30.300.20GeneID:844719Genevisible:P56798GO:GO:0003735
GO:GO:0006412GO:GO:0009507GO:GO:0015935GO:GO:0019843
Gramene:ATCG00800.1HAMAP:MF_01309_Bhmmpanther:PTHR11760hmmpanther:PTHR11760:SF19
HOGENOM:HOG000210610InParanoid:P56798InterPro:IPR001351InterPro:IPR004044
InterPro:IPR005704InterPro:IPR009019InterPro:IPR015946InterPro:IPR018280
KEGG:ath:ArthCp061KO:K02982OMA:ELQMNVQPaxDb:P56798
Pfam:P56798Pfam:PF00189Pfscan:PS50823PRIDE:P56798
PRO:PR:P56798PROSITE:PS00548PROSITE:PS50823ProteinModelPortal:P56798
Proteomes:UP000006548RefSeq:NP_051096.1scanprosite:PS00548SMR:P56798
STRING:3702.ATCG00800.1SUPFAM:SSF54814SUPFAM:SSF54821TAIR:ATCG00800
TIGRfam:TIGR01009TIGRFAMs:TIGR01009UniProt:P56798
Coordinates (TAIR10) chrC:-:82826..83482
Molecular Weight (calculated) 25190.00 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.35
Length 218 amino acids
Sequence (TAIR10)
(BLAST) 		001: MGQKINPLGF RLGTTQSHHS LWFAQPKKYS EGLEEDKKIR DCIKNYVQKN IRISSGMEGI ARIEIQKRID LIQIIIYMGF PKLLIEDKPR RVEELQMNVQ
101: KELNCVNRKL NIAITRISNP YGDPNILAEF IAGQLKNRVS FRKAMKKAIE LTEQANTKGI QVQIAGRIDG KEIARVEWIR EGRVPLQTIE AKIDYCSYTV
201: RTIYGVLGIK IWIFVDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)