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ATCG00130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ATPase, F0 complex, subunit B/B', bacterial/chloroplast
Curator
Summary (TAIR10)		 ATPase F subunit.
Computational
Description (TAIR10)		 ATPF; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: cellular respiration, mitochondrial ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit B/B', bacterial/chloroplast (InterPro:IPR002146).
Protein Annotations
BioGrid:29983eggNOG:COG0711eggNOG:ENOG410IZKFEMBL:AP000423
EnsemblPlants:ATCG00130EnsemblPlants:ATCG00130.1entrez:844789GeneID:844789
Genevisible:P56759GO:GO:0005524GO:GO:0009535GO:GO:0015986
GO:GO:0016021GO:GO:0045263GO:GO:0046933Gramene:ATCG00130.1
HAMAP:MF_01398hmmpanther:PTHR34264HOGENOM:HOG000034202InParanoid:P56759
InterPro:IPR002146KEGG:ath:ArthCp008KO:K02109ncoils:Coil
OMA:QRTINQVPaxDb:P56759Pfam:P56759Pfam:PF00430
PRIDE:P56759PRO:PR:P56759ProteinModelPortal:P56759Proteomes:UP000006548
RefSeq:NP_051045.1STRING:3702.ATCG00130.1TAIR:ATCG00130tair10-symbols:ATPF
TMHMM:TMhelixUniProt:P56759
Coordinates (TAIR10) chrC:-:11529..12798
Molecular Weight (calculated) 21058.20 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.39
Length 184 amino acids
Sequence (TAIR10)
(BLAST) 		001: MKNLTDSFVY LGHWPSAGSF GFNTDILATN PINLSVVFGV LIFFGKGVLN DLLDNRKQRI LNTIRNSEEL REGAIQQLEN ARARLRNVET EADKFRVNGY
101: SEIEREKLNL INSTYKTLKQ LENYKNETIL FEQQRTINQV RERVFQQALQ GAIGTLNSCL SNELHLRTIN ANIGMFGTMK EITD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)