AT5G67540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabinanase/levansucrase/invertase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabinanase/levansucrase/invertase; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT3G49880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26944253..26946058 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52955.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.02 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGYSSSAGL RGFAGGCRYS LLTIVWTVVG FFLVAHLISL YSRKDNNIHQ QVSSDQLQVV HHLAHPIVRE LIRVEEEVLR MPPPRKRSPR TSKRRSRKPI 101: PLVEEFLDDK SPIRHLFFPG IKTAAFGPTK DMGNETSYYF PGKIWMDTQG NPIQAHGGGI LLDVKSNTYY WYGEYKDGPT YHAHKKGPAR VDIIGVGCYS 201: SKDLWTWKNE GIVLGAEETN KTHDLHKSNV LERPKVIYNE KTEKYVMWMH IDDANYTKAS VGVAISNSPT GPFEYLYSKR PHGFDSRDMT VFKDDDGVAY 301: LIYSSEVNSV LHIGPLTEDY LDVTPVMKRV MVGQHREAPA IFKHQNIYYM VTSWCTGWAP NEALAHAAES IMGPWEKLGN PCIGGNKVFR LTTFFAQSTY 401: VIPLPGVPGA FIFMADRWNP ADLRDSRYVW LPLVIGGPAD QPLEFNFGFP SWSRVSIYWH SKWRLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)