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AT5G67300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein r1
Curator
Summary (TAIR10)
Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
Computational
Description (TAIR10)
myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22107eggNOG:COG5147eggNOG:KOG0048EMBL:AB007645
EMBL:AF326877EMBL:AF339698EMBL:AY052297EMBL:AY061923
EMBL:AY087295EMBL:AY519648EMBL:CP002688EMBL:Z54136
EMBL:Z95768EnsemblPlants:AT5G67300EnsemblPlants:AT5G67300.1entrez:836865
Gene3D:1.10.10.60GeneID:836865Genevisible:Q9FDW1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414
GO:GO:0009651GO:GO:0009723GO:GO:0009733GO:GO:0009737
GO:GO:0009738GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0010200GO:GO:0042742GO:GO:0046686GO:GO:0050832
GO:GO:2000022GO:GO:2000031Gramene:AT5G67300.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF483HOGENOM:HOG000238704InParanoid:Q9FDW1InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930iPTMnet:Q9FDW1KEGG:ath:AT5G67300
KO:K09422OMA:RSHESTNPaxDb:Q9FDW1Pfam:PF00249
Pfam:Q9FDW1Pfscan:PS51294PhylomeDB:Q9FDW1PIR:S71284
PRIDE:Q9FDW1PRO:PR:Q9FDW1PROSITE:PS51294ProteinModelPortal:Q9FDW1
Proteomes:UP000006548RefSeq:NP_201531.1SMART:SM00717SMR:Q9FDW1
STRING:3702.AT5G67300.1SUPFAM:SSF46689TAIR:AT5G67300tair10-symbols:ATMYB44
tair10-symbols:ATMYBR1tair10-symbols:MYB44tair10-symbols:MYBR1UniGene:At.252
UniGene:At.28816UniGene:At.71205UniGene:At.71301UniGene:At.71916
UniProt:Q9FDW1
Coordinates (TAIR10) chr5:+:26854109..26855026
Molecular Weight (calculated) 33270.10 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.60
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)