AT5G66420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:26521893..26524537 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70037.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 655 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKCLENFLR QAFEDNSLAG AIGLGGSGGT SLISSAFRSL PIGIPKVIVS TVASGQTEPY VGTSDLVLIP SLVDVCGINS VSRVVFSNAG ASFAGMVVGR 101: LELFRSSPSD NGKCTVGITM FGVTTPCVNA VQEILTREGY ETLVFHATGV GGRAMESLVK EGFIQGVMDI TTTEVADHLV GGVMACDSSR FDITIEKGIP 201: LVLSVGALDM VNFGGKDTIP SHFQTRKIHV HNEQVSLIRT TAEENKKFAR FIADKLNKST SKVRVCIPEK GLSALDAPGK PFCDPEATGA LINELQGLIQ 301: TNDDRQVNIY SHHINDPEFA EALVASFLEI CPKTYAQIKP SETTSTKPST GEHDDGHVRS RLERIPYSPK EFPNAKPETL ERTQAILGRL RDQIEKGIPI 401: IGGGAGTGIS AKFEEAGGID LIVIYNSGRF RMAGRGSLAG LLPFADANAV VLEMANEVLP VVKAVPVLAG VCATDPFRRM DYFLKQLESI GFVGVQNFPT 501: VGLFDGNFRQ NLEETGMGYG LEVKMISEAH KMGLLTTPYA FNPKEGEEMA KAGADIIVAH MGLTTSGNIG AKTAVSVEES VVRVQAIADA ARRFNPDIIV 601: LCHGGPISGP EEAEFVLKRT QGCVHGFYGA SSMERLPVEQ AITNTVQKYK SISIK |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)