AT5G66150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family 38 protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26439013..26444434 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118014.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1047 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKPGMSLLK GSLCVIVFLL LLSLVESVKG GGYVKYGTEA KVVPGKLNVH LVPHSHDDVG WLKTVDQYYV GSNNRIQNAC VRNVLDSVVD SLLRDPNRKF 0101: VFAEMAFFTR WWEEQSPERQ EQVRRLVKSG QLEFVNGGWA MNDEATCHYI DMIDQTTKGH RFIKQQFNTT PRAAWQIDPF GHSSVQAYLL GAELGLDSVH 0201: FARIDYQDRE KRKAEKSLEV IWRGSKTLDS SSQIFTNIFF VHYGPPTGFH YEVTDDYVPL QDNPRFDGYN IKEAVNDFVN ASLVYANVSR GNHVMWTMGD 0301: DFQYQFAESW FRQMDRLIHY VNKDGRVNAL YSTPSLYVDA KNVANVTWPL KTHDFFPYAD RAYAYWTGYF TSRPALKRYV RALSGYYMAA RQLEFLVGKN 0401: SGGPNTYSLG DALGIAQHHD AVTGTAKQHV TNDYMKRLAL GASEAEAVVN SALACLMNKA PKGGCTKPAI AFSQQCSLMN ISYCPSTEET LPGQKSLILV 0501: AYNSLGWNRT EIIRIPVNDA GLSVEDSSGN TLDAQYIPMD NVTSNLRSFY TKAYLGISSL QRPKYWLVFK AKVPPLGWNT FFISKASAQG SNNHKHSSVM 0601: LSPMNNTTEI GPGNLKMVFS SDSGRLERMY NSRTGADIKV DQNYFWYASN VGDAKDPQVS GAYIFRPNGS LAYPVSSSKI CTVTSAFIGN GNVQSKLQIV 0701: RGPLIDEVHQ QFSPWVAQVV RLYKEKEHAE FEFTIGPISV GKGHLTGKEI ITRMVTDMTT AKEFYTDSNG RDFLKRVRDN RTDWHLEVNE PIAGNYYPLN 0801: LGMYIKDEKA ELSVLVDRAT GGASIKDGEI ELMLHRRTSM DDSRGVEESL VETVCVNDTC AGLTIRGNYY VSINKVGEGG RWRRETGQEI YSPLLMAFAH 0901: ENKEKWKASN TVKGYAMDHL YTLPQNIALI TLEELDLGNV LLRLAHLYEA GEDSDYSKIA KVELKKLFSG KMIKEVTEMS LSANQEKVKM KEKMKWKVEG 1001: EAEQPSSPLR GGPVDKSTLV VELGPMEIRT FVVQFYQKQR RRKLFVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)